Scientific step | Coordinator | Challenges/solutions | Benefit for researchers |
---|---|---|---|
Project management | Researcher | Definition of question, aim of the study, study and experimental design | Â |
Pathologist | Experimental design with focus on appropriate mouse models and histopathological evaluation with focus on co-localization | Choosing a suitable animal model for the research question, appropriate/realistic time table | |
In vivo imaging | Researcher | Performance, coordination of procedure and time table in consultation with pathologist | Â |
Pathologist | Coordination of histopathological tissue processing after in vivo imaging according to time table of researcher | Fast and correct tissue sampling and processing | |
Submission of tissue/animals | Researcher | Inform pathologist before necropsy, planning of necropsy in consultation with pathologist | Â |
Pathologist | Feedback to researcher about time table, fixation, tissue processing with focus on co-localization, provide appropriate protocols for necropsy | Fast and correct tissue sampling and processing | |
Co-localization | |||
- Basic co-localization | Researcher | Definition of question and aim of co-localization approach | Â |
Planning of necropsy with focus on special orientation | Â | ||
Pathologist | Planning and consulting of necropsy and tissue processing - Flagging by ink - Embedding in the right plane - Consecutive slides | Ensure the correct orientation of tissues for later co-localization | |
- Complex co-localization | Researcher | Definition of question and aim of co-localization approach | Â |
Planning of necropsy with focus on special orientation | Â | ||
Pathologist | Planning/consulting of necropsy/tissue processing with focus on orientation - Removement of tissue with adjacent organ structures - Flagging by ink - Embedding in the right plane - Consecutive slides | Ensure the correct orientation of tissues for later co-localization | |
Tissue processing | Researcher | In consultation with pathologist | Â |
Pathologist | Time table and coordination with the pathology laboratory (e.g. CEP) - Fixation - Embedding in the right plane, special orientation - Cutting: number and type of slides, consecutive slides - Staining: H&E, additional special stainings | Fast and appropriate tissue processing | |
- Immunohistochemistry | Selection of the right target antigen, antibody, protocol | ||
- Scanning | Simplification of co-localization and co-registration | ||
Histopathological evaluation | Researcher | In consultation with pathologist | Â |
Pathologist | Evaluation of H&E stains, special stainings, immunohistochemistry | Correct histopathological diagnosis because of - Classification of lesions in a comparative way - Standardized vocabulary in description - Knowledge of strain-specific background lesions - Knowledge of differential diagnoses (non-expected alterations) | |
Co-registration | Researcher | Combining in vivo imaging with histopathological findings, in consultation with pathologist | Â |
Pathologist | Consulting researcher with focus on co-localization of histomorphological findings to in vivo imaging | Use of correct histopathological terms and localization for description of findings | |
Summary | Interdisciplinary cooperation | Accuracy and reproducibility of results |